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Damir Baranasic - NGS data processing and analysis
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Damir Baranasic

NGS data processing and analysis
University of London • Imperial College London • London • United Kingdom

Skills and expertise

Fields of interest
  • WGS analysis
  • ChIP-seq analysis
  • BS-seq analysis
Languages
  • English
Programming languages
  • MATLAB
  • Python
  • R

Fields of interest

WGS analysis
Allows users to conduct large-scale comparisons of their results with thousands…
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…
Maps a read against a reference region if and only if its estimated alignment…
ChIP-seq analysis
Calls peaks in ChIP-seq data with biological replicates. BinQuasi jointly…
Supplies a set of features dedicated to quality check (QC) of next generation…
Allows users to test multiple gene sets on a tree-transformed gene ontology…
BS-seq analysis
Allows users to conduct large-scale comparisons of their results with thousands…
Provides a library written in Nim programming language that suits for simple…
Permits researchers to conduct investigation and construct high-quality…