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Benjamin Ulfenborg - Developing tools for multi-omics data integration
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Benjamin Ulfenborg

Developing tools for multi-omics data integration
University of Skövde • Skövde • Sweden

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • DNA methylation array analysis
  • MS-based untargeted proteomics
Languages
  • English
Programming languages
  • C++
  • Perl
  • R

TOOLS MAINTAINED

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miREC

Dataset

miREC

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Provides information about genes and miRNAs potentially involved in the development of endometrial cancer (EC). miREC focuses on EC to facilitate the derivation of disease specific information. The…

Fields of interest

RNA-seq analysis
Permits identification of alternative first exons (FEs) and alternative tandem…
Compares differential abundance and expression methods on a targeted dataset.…
Allows demultiplexing 5’-indexed reads. Axe matches the prefix of a sequence…
DNA methylation array analysis
Enables the application of gene set tests (GST) in the absence of large parts…
Enables users to analyze pathways based on the variability of the expression of…
Extends the Integrative Genomics Viewer (IGV) with feature for curation…
MS-based untargeted proteomics
Automates the recognition and quantification of proteoforms. Proteoform Suite…
Exploits "single cell proteomics by mass spectrometry" (SCoPE-MS) software data…
Detects modified peptide sequence from high-quality tandem mass spectra.…