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Bianca Habermann - Computational Biology
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Bianca Habermann

Computational Biology
Aix-Marseille University • Developmental Biology Institute of Marseille • Marseille • France

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Gene expression microarray analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • Python

TOOLS MAINTAINED

SLALOM

Desktop

SLALOM / StatisticaL Analysis of Locus Overlap Method

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Estimates multiple sequence annotations of continuous sequence elements (CSE) in a group of sequences. SLALOM offers to users the choice to applicate logic of handling overlaps and duplicates within…

HH-MOTiF

Web

HH-MOTiF / HH-MOtif-TreeFinder

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Combines hidden Markov model (HHM) comparisons with a hierarchical representation of identified SLiMs in motif trees. HH-MOTiF is a web-server that can find remotely conserved motifs in data sets…

Fields of interest

RNA-seq analysis
Deduces target gene expression profiles using a conditional generative model.…
Changes nucleotide sequences into interactive browser-based two-dimensional…
Performs secure analyses and visualization of users’ private functional…
Gene expression microarray analysis
Changes nucleotide sequences into interactive browser-based two-dimensional…
Performs secure analyses and visualization of users’ private functional…
Provides a pattern recognition for cell-free DNA (cfDNA). CfdnaPattern is an…
Protein interaction analysis
Deduces target gene expression profiles using a conditional generative model.…
Enables the simplification and compression of graphs based on high frequency…
Allows the extraction of protein-protein interactions (PPIs) including…