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Blandine Trouche - PhD student
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Blandine Trouche

PhD student
University of Western Brittany • Brest • France

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
Languages
  • English
  • French
Programming languages
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Annotates and filtrates variant files. VarAFT allows the comparison of several…
Evaluates rare short tandem repeat (STR) expansions from whole genome…
Corrects genotype calls for improving genetic mapping in F2 and recombinant…
De novo sequencing analysis
Investigates biological patterns. PatScan is an application based on the use of…
Supplies a protein homology search method alternative to BLAST. TOPAZ is a…
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Metagenomic sequencing analysis
Allows users to filter, convert and combine multiple data files produced by…
Allows users to return all read mappings within a given edit distance. FEM is…
Allows pan-genome-scale network reconstruction. This method includes features…