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Brian Halligan - Everything
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Brian Halligan

Everything
University of Michigan–Ann Arbor • Ann Arbor • United States of America

Skills and expertise

Fields of interest
  • Genome edition
  • RNA-seq analysis
  • MS-based untargeted proteomics
Languages
  • English
Programming languages
  • Perl

Fields of interest

Genome edition
Constructs optimal gRNAs for the CRISPR-Cpf1 system. CRISPR-DT can take into…
Assesses deep-sequencing data from clustered regularly interspaced short…
Performs analysis, visualization and comparison of sequencing data from genome…
RNA-seq analysis
Recognizes tissue-specific poly(A) sites (tsPAs) in plants. TSAPA is based on a…
Compresses coordinate sorted aligned SAM, BAM or CRAM files. Crumble is a…
Extends the Integrative Genomics Viewer (IGV) with feature for curation…
MS-based untargeted proteomics
Provides an extensible search platform for shotgun proteomics. IdentiPy is a…
Implements algorithms for exploiting the retention time information in de novo…
Contains a library to process over- and under-representation of certain gene…