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Bruno Contreras-Moreira - Computational Biology
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Bruno Contreras-Moreira

Computational Biology
Spanish National Research Council • Estación Experimental de Aula Dei • Zaragoza • Spain

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • English
  • Spanish
Programming languages
  • C++
  • Perl
  • R

Reviews and Discussions

LATEST REVIEWS

GET_HOMOLOGUES 2018-10-10, 12:45:13
After reading sro's review, just wanted to add that Alvaro Rodriguez and me have recently tested length normalization as done by OrthoFinder. You can find the results at…

LATEST DISCUSSIONS

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TOOLS MAINTAINED

MEBS

Desktop

MEBS / Multigenomic Entropy Based Score pipeline

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Evaluates the importance of global biogeochemical cycles or major metabolic pathways in multigenomic scale. MEBS is a computational pipeline that is composed of four steps: (i) curates the metabolic…

TFcompare

Web

TFcompare

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Superposes pairs of transcription factor (TF)-DNA complexes in order to obtain structural alignments of cis elements recognized by homologous TFs. TFcompare calculates structural alignments between…

Fields of interest

WGS analysis
Identifies copy number variants (CNVs) within targeted next generation…
Displays interactive mining of complex neuroimaging genomics data. Genome…
Allows copy number variation (CNV) detection. iCNV can be applied in whole…
RNA-seq analysis
Provides an online platform for normalization, calculation of performance…
Allows detection of collaborative transcription factor pairs. MMARGE consists…
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…
ChIP-seq analysis
Identifies transcription factors (TF) binding sites by combining bidirectional…
Allows detection of collaborative transcription factor pairs. MMARGE consists…
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…