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Jaroslav Budis - NIPT testing, metagenomics, RNA-seq, virus identification
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Jaroslav Budis

NIPT testing, metagenomics, RNA-seq, virus identification
Comenius University • Bratislava • Slovakia

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Java
  • Python
  • Shell (Bash)

TOOLS MAINTAINED

Dante

Desktop

Dante

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Furnishes method for genotyping and characterizing short tandem repeats (STR) alleles. Dante uses a model tailored to specific structure of STR sequences of interest, and may recover complex…

Fields of interest

WGS analysis
Makes comparison between polygenicity across allele frequencies and functional…
Offers a method for detecting mutational signatures. SparseSignatures is a…
Generates and handles bioinformatics pipelines. STAPLER includes an assortment…
RNA-seq analysis
Deduces target gene expression profiles using a conditional generative model.…
Changes nucleotide sequences into interactive browser-based two-dimensional…
Performs secure analyses and visualization of users’ private functional…
Metagenomic sequencing analysis
Changes nucleotide sequences into interactive browser-based two-dimensional…
Performs secure analyses and visualization of users’ private functional…
Integrates both phenotypic measurements and genetic variants as features for…