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Çağla AKSU - Viruses
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Çağla AKSU

Viruses
Karadeniz Technical University • Trabzon • Turkey

Skills and expertise

Fields of interest
  • Immune system analysis
  • De novo sequencing analysis
  • Gene expression array analysis
Languages
  • English

Fields of interest

Immune system analysis
Serves for determining the binding of peptides to major histocompatibility…
Provides a means to model T cell receptors (TCRs) structures from sequence.…
Enables analysis of multicell-per-well sequencing data. MAD-HYPE consists of a…
De novo sequencing analysis
Identifies precise transcription factor binding sites (TFBS). DeepSNR is based…
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…
Provides a tool for ortholog identification. JustOrthologs focuses on orthologs…
Gene expression array analysis
Aims to characterize non-model organisms. IDP-denovo allows users to handle…
Discovers low-rank biclusters within a large data-matrix. This method can be…
Supplies a protein homology search method alternative to BLAST. TOPAZ is a…