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Calvi Caswara - Bioinformatics
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Calvi Caswara

Bioinformatics
Free University of Berlin • Berlin • Germany

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Gene expression array analysis
Languages
  • English
  • German
Programming languages
  • C++
  • Java
  • MATLAB
  • Python
  • R
  • Shell (Bash)

Reviews and Discussions

LATEST REVIEWS

Jellyfish 2018-01-22, 10:55:39
fast tool, easy to handle and install
dDocent 2018-01-22, 10:54:03
works fine, is quite fast and easy to install, good documentation

LATEST DISCUSSIONS

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Fields of interest

WGS analysis
Deduces ancestral characters on a rooted phylogenetic tree. PastML can…
Corrects long read hybrid errors. HG-CoLoR combines both (i) the idea to…
Provides a workflow management system that extends Airflow's functionality.…
De novo sequencing analysis
Evaluates a phylogeny using a root-to-tip approach to define sub-lineages…
Identifies viral insertion sequences for the genome of human cancers. HGT-ID…
Estimates genomic island (GI) locations in chromosomal sequences. SWIGIS…
Gene expression array analysis
Contains a library to process over- and under-representation of certain gene…
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…
Allows detection of a subset of transcriptomic or methylomic residues. TriVote…