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Casper Jamin - Molecular microbiology
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Casper Jamin

Molecular microbiology
Maastricht University Medical Centre • Maastricht • Netherlands

Skills and expertise

Fields of interest
  • WGS analysis
  • Metagenomic sequencing analysis
  • aCGH data analysis
Languages
  • English
Programming languages
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Provides an alignment-free single nucleotide polymorphism (SNP) genotyping…
Provides a workflow management system that extends Airflow's functionality.…
Consists of a method for calling of copy number alterations (CNAs) from…
Metagenomic sequencing analysis
Samples K-mers in both input genomes. copMEM employs properties of coprime…
Enables to build custom genome browsers. GIVe is a programming library allowing…
Filters spurious variants caused by mouse reads in patient-derived xenografts…
aCGH data analysis
Permits user to work on segmentation of genomic and epigenomic profiles. iSeg…
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…
Analyzes next-generation sequencing (NGS) from experiments using unique…