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Casse Fanny - France
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Casse Fanny

University of Rennes 1 • Rennes • France

Skills and expertise

Fields of interest
  • WES analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • French
Programming languages
  • Assembly language

Fields of interest

WES analysis
Maps bisulfite-treated short DNA reads to a reference genome. BisPin supports…
Provides a high-risk pedigrees (HRP) method. SGS recognizes segregating…
Refines regulatory motifs. LMMO consists of a large-margin-type algorithm that…
De novo sequencing analysis
Provides a method for inferring transmission events. BadTrIP models evolution…
Enables large-scale metagenome and transcriptome reads clustering. SpaRC is an…
Generates and analyzes whole or partial viral genomes from next-generation…
Metagenomic sequencing analysis
Designs probe sets for whole genome capture of highly diverse target sequences…
Performs assignment for bacterial 16S and amplicon sequencing. HmmUFOtu is a…
Proposes an iterative approach to assembling metagenomic datasets. Spherical…