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Cindy Boer - PhD-student
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Cindy Boer

PhD-student
Erasmus University Medical Center • Rotterdam • Netherlands

Skills and expertise

Fields of interest
  • WGS analysis
  • BS-seq analysis
  • aCGH data analysis
Languages
  • English
Programming languages
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Enables linkage disequilibrium (LD) decay analysis. PopLDdecay allows…
Discovers the mean in a partition distribution. mean_partition is based on an…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
BS-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Integrates both phenotypic measurements and genetic variants as features for…
Annotates and filtrates variant files. VarAFT allows the comparison of several…
aCGH data analysis
Consists of a Bayesian, unsupervised, integrative clustering model for…
Combines several steps for a high-quality probe and primer design for a variety…
Analyzes next-generation sequencing (NGS) from experiments using unique…