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Conrad Stack - plant genomics
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Conrad Stack

plant genomics

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • aCGH data analysis
  • English
Programming languages
  • Python
  • R

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Fields of interest

WGS analysis
Genotype tandem repeats (TRs) at population scale. GtTR is a probabilistic…
Constructs short sequence read sets for thousands of spike-in variants that…
Provides an integrated web-oriented interface for bioinformatic tools. WAVES is…
De novo sequencing analysis
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…
Breaks the annotated genomes of a large number of strain into genes and further…
Estimates multiple sequence annotations of continuous sequence elements (CSE)…
aCGH data analysis
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…
Combines several steps for a high-quality probe and primer design for a variety…