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Cristin Lopez - Cancer
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Cristin Lopez

Cancer
University of Ulm • Ulm • Germany

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • aCGH data analysis
Languages
  • English

Fields of interest

WGS analysis
Integrates predictions of several popular scores (SIFT, Polyphen-2, LRT,…
Builds maps for two genotype datasets: barley and potato from diploid and…
Exploits independent genome wide associations studies (GWAS) in multiple traits…
RNA-seq analysis
Enables network discovery from perturbed expression data. This approach…
Cluster-select the optimal number of clusters and removes outlier objects.…
Enables users to analyze pathways based on the variability of the expression of…
aCGH data analysis
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…
Consists of a Bayesian, unsupervised, integrative clustering model for…