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David Eme - Community phylogenetics
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David Eme

Community phylogenetics
Massey University • Palmerston North • New Zealand

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
  • French
Programming languages
  • R

Fields of interest

De novo sequencing analysis
Detects degenerate nucleotide motif matches in FASTA files. Motif Scraper…
Identifies intermediate-size indels using a combination of soft-clipped…
Allows users to perform de novo discovery of k-mer set memories (KSMs). KMAC is…
RNA-seq analysis
Predicts missing links in any given bipartite network. Netpredictor provides…
Enables genotyping and variant annotation of resequencing data produced by…
Reports candidate transposable elements (TEs) to be considered in downstream…
Metagenomic sequencing analysis
Breaks the annotated genomes of a large number of strain into genes and further…
Implements several different transition kernels for updating a phylogenetic…
Indexes very large and repetitive references to align short reads to them very…