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Deepak Kumar - Bioinformatician
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Deepak Kumar

Indiana University Health • Indianapolis • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • ChIP-seq analysis
  • English
Programming languages
  • Python

Fields of interest

WGS analysis
Deduces ancestral characters on a rooted phylogenetic tree. PastML can…
Allows users to infer population structure. POPSTR is a Bayesian integrative…
Investigates developmental epigenomes and transcriptomes that are related to De…
RNA-seq analysis
An indexing scheme to support sequence-based querying of terabyte-scale…
A robust rank-based classifier for gene expression classification. AUCTSP works…
Predicts gene regulatory regions from genome sequences. DeepGMAP supplies a…
ChIP-seq analysis
Simplifies downstream utilization of high-throughput sequencing (HTS) data.…
Annotates and filtrates variant files. VarAFT allows the comparison of several…
Predicts cell-type specificity of a transcription factors (TFs) binding site…