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Devin McCabe - Retired
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Devin McCabe

Retired
Dana–Farber Cancer Institute • Boston • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • WES analysis
  • scRNA-seq analysis
Languages
  • English
Programming languages
  • R

Fields of interest

WGS analysis
Implements several different transition kernels for updating a phylogenetic…
Provides a method for inferring transmission events. BadTrIP models evolution…
Allows users to extract a statistically significant subset of a determined set…
WES analysis
Investigates mutation count data to assess the signatures of mutational…
Calculates the mutation distance between two strings of the length…
Allows estimation of discordant sequences between monozygotic (MZ) twins.…
scRNA-seq analysis
Permits analysis of single-cell gene transcriptional profiles. CALISTA provides…
Aims to group cells and enhance interpretability of the formed groups. DEPECHE…
Simplifies downstream utilization of high-throughput sequencing (HTS) data.…