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Dong Li - Bioinformatics
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Dong Li

Bioinformatics
Beijing Proteome Research Center • Beijing • China

Skills and expertise

Fields of interest
  • Gene expression array analysis
  • MS-based untargeted proteomics
  • Protein interaction analysis
Languages
  • Chinese
Programming languages
  • Perl

TOOLS MAINTAINED

AllerGAtlas

Dataset

AllerGAtlas

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Collects identified allergy-related genes by the literature-mining and manual curation. AllerGAtlas provides an overview of human allergy-related genes and their related diseases. It includes almost…
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CAPER

Web

CAPER / Chromosome-Assembled human Proteome browsER

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Allows storage, integration and visualization of multiple heterogeneous proteomic experimental data together with their annotations. CAPER can serve for processing, integrating, and indexing the…

HisgAtlas

Dataset

HisgAtlas

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Covers a set of about 1 000 previously identified human immunosuppression genes using text mining and manual curation. HisgAtlas supplies information about human immunosuppression genes and their…

UbiBrowser

Dataset

UbiBrowser

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Allows users to look into human ubiquitin ligase-substrate interaction network. UbiBrowser tries to simplify access to information concerning human ubiquitin ligase (E3) or substrate protein. The…

SLIPPER

Web

SLIPPER / SeLf-Interacting Protein PrEdictoR

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Predicts proteome-wide of self-interacting proteins. SLIPPER uses various related annotation information such as interaction partners in the protein interaction network (PIN), domains, and…

Fields of interest

Gene expression array analysis
Allows users to perform clustering analysis. NNC is a method based on k-means…
Extends the Integrative Genomics Viewer (IGV) with feature for curation…
Allows users to perform class discovery. M3C is based on a reference-based…
MS-based untargeted proteomics
Recognizes spatiotemporal relationships in the human brain. brainImageR offers…
Permits users to import, integrate, manage and compare numerous proteomics…
Extracts meta and scan data and performs quantification as well as quality…
Protein interaction analysis
Predicts RNA protein interaction via extreme gradient boosting classifier named…
Allows global pairwise network alignment of protein-protein interactions (PPI)…
Allows visualization and prediction of potential interaction regions at protein…