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Dorrie Main - Bioinformaticist Researcher and teacher
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Dorrie Main

Bioinformaticist Researcher and teacher
Washington State University • Pullman • United States of America

Skills and expertise

Fields of interest
  • Genome edition
  • De novo sequencing analysis
  • RNA-seq analysis
Languages
  • English
Programming languages
  • Perl
  • PHP
  • Python

TOOLS MAINTAINED

CGD

Dataset

CGD / Cacao Genome Database

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Provides access to sequence and annotations from the Theobroma cacao cv. Matina 1-6 cacao genome sequencing project. CGD is a comprehensive data mining resource that also provides access to several…

CottonGen

Dataset

CottonGen

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Gathers public genomic, genetic and breeding data for cotton. CottonGen is composed of whole genome sequences, unigenes from expressed sequence tags (ESTs), markers, trait loci, genetic maps, genes,…

GDR

Dataset

GDR / Genome Database for Rosaceae

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A central repository of curated and integrated genetics and genomics data of Rosaceae, an economically important family which includes apple, cherry, peach, pear, raspberry, rose and strawberry.

Fields of interest

Genome edition
Processes batch analysis of CRISPR edits using Sanger data. ICE can quantify…
Identifies, quantifies and visualizes genuine genome editing events form CRIPR…
Constructs optimal gRNAs for the CRISPR-Cpf1 system. CRISPR-DT can take into…
De novo sequencing analysis
Determines the binary matrix of haplotypes and the proportions in the samples.…
Includes implementations of the autopolyploid (diseq), allopolyploid (alloSNP),…
Constructs and publishes websites for synteny block analyses by exploiting…
RNA-seq analysis
Analyzes RNA-seq count data. dNBFA is built on a Bayesian covariate-dependent…
An artificial neural networks (ANN) framework to predict patient prognosis from…
Recognizes spatiotemporal relationships in the human brain. brainImageR offers…