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Dorrie Main - Bioinformaticist Researcher and teacher
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Dorrie Main

Bioinformaticist Researcher and teacher
Washington State University • Pullman • United States of America

Skills and expertise

Fields of interest
  • Genome edition
  • De novo sequencing analysis
  • RNA-seq analysis
Languages
  • English
Programming languages
  • Perl
  • PHP
  • Python

TOOLS MAINTAINED

CGD

Dataset

CGD / Cacao Genome Database

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Provides access to sequence and annotations from the Theobroma cacao cv. Matina 1-6 cacao genome sequencing project. CGD is a comprehensive data mining resource that also provides access to several…

CottonGen

Dataset

CottonGen

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Gathers public genomic, genetic and breeding data for cotton. CottonGen is composed of whole genome sequences, unigenes from expressed sequence tags (ESTs), markers, trait loci, genetic maps, genes,…

GDR

Dataset

GDR / Genome Database for Rosaceae

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Provides a curated and integrated repository of Rosaceae genetics, genomics and breeding data and analysis tools. GDR gathers for every species information such as quantitative trait loci (QTL),…

Fields of interest

Genome edition
Estimates candidate microhomologymediated end joining (MMEJ) loci. MENTHU…
Examines and evaluates sequencing reads from clustered regularly interspaced…
Performs analysis, visualization and comparison of sequencing data from genome…
De novo sequencing analysis
Assists in small-variant detection. Pisces is designed to be used on germline…
Represents all sequence reads and their similarity relationships using a graph…
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
RNA-seq analysis
Identifies protein-lncRNA interactions. PLIPCOM is constructed from three…
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
Identifies genetic variants that overlap with genes coding for lincRNA or miRNA…