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Dries Verdegem - metabolomics bioinformatics
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Dries Verdegem

metabolomics bioinformatics
University of Antwerp • Flanders Institute for Biotechnology • Gent • Belgium

Skills and expertise

Fields of interest
  • MS-based untargeted proteomics
  • MS-based untargeted metabolomics
  • Protein interaction analysis
Languages
  • English
  • French
Programming languages
  • Python

Bioinformatics projects

TOOLS MAINTAINED

MAIMS

Desktop

MAIMS / Multistart Algorithm for Isotopologues in Metabolic Systems

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Provides a sensitive and complementary analysis method for the relative measurement of enzymatic activity and the detection of substrate subcellular localization. MAIMS is capable of finding the…

Fields of interest

MS-based untargeted proteomics
Allows protein identification with robust peptide mass fingerprinting (PMF)…
Exploits "single cell proteomics by mass spectrometry" (SCoPE-MS) software data…
Simplifies the annotations of N-glycans in ultra-performance liquid…
MS-based untargeted metabolomics
Identifies metabolites from untargeted liquid chromatography-mass spectrometry…
Provides a web server of in silico metabolization of metabolites. MetWork is an…
Measures parsimonious metabolic networks for generating metabolites. GridProd…
Protein interaction analysis
Allows the extraction of protein-protein interactions (PPIs) including…
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…
Assists users with virtual screening. BindScope is a web GPU-accelerated…