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Thomas Eder - Bioinformatics
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Thomas Eder

Bioinformatics
Ludwig Boltzmann Gesellschaft • Ludwig Boltzmann Institute for Cancer Research • Vienna • Austria

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • English
  • German
Programming languages
  • C
  • C#
  • Java
  • Perl
  • Python
  • R
  • Shell (Bash)

Fields of interest

De novo sequencing analysis
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
Discovers the mean in a partition distribution. mean_partition is based on an…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
RNA-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Assists users for annotating transcriptome and functional analysis of…
Enables exploration and classification of large collections of gene clusters.…
ChIP-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Allows deduction of gene ontology (GO) attributes of proteins. MetaGO combines…
Performs σ54 recognition. S54Finder was developed to work with short DNA…