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Eliot Bush - Develop tools for reconstructing genome evolution
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Eliot Bush

Develop tools for reconstructing genome evolution
Harvey Mudd College • Claremont • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • Metagenomic sequencing analysis
  • DNA methylation array analysis
Languages
  • English
Programming languages
  • C
  • Python
  • R

Bioinformatics projects

TOOLS MAINTAINED

xenoGI

Desktop

xenoGI

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Identifies and maps genomic islands. xenoGI contains several features: it groups genes by origin, identifies islands of genes that entered via common horizontal transfer events, and maps those events…

Fields of interest

WGS analysis
Enables linkage disequilibrium (LD) decay analysis. PopLDdecay allows…
Discovers the mean in a partition distribution. mean_partition is based on an…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Metagenomic sequencing analysis
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Clarifies detailed evolutionary relationships between gene clusters. CORASON…
DNA methylation array analysis
Changes nucleotide sequences into interactive browser-based two-dimensional…
Performs secure analyses and visualization of users’ private functional…
Assists users for visualizing ancestry data. AncestryView first proceeds by…