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Em O'Donnell - 16S and NGS microbiome analyses
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Open to new opportunities

Em O'Donnell

16S and NGS microbiome analyses
Johns Hopkins University • Baltimore • United States of America

Skills and expertise

Fields of interest
  • Metagenomic sequencing analysis
  • MS-based untargeted metabolomics
  • Protein interaction analysis
Languages
  • English
Programming languages
  • R
  • Shell (Bash)

Fields of interest

Metagenomic sequencing analysis
Allows users to perform reconstruction of phylogenetic trees and ancestral…
Enables utilization of available data and accurate inference of species tree…
Displays the sequence space and calculates locations of sequences of interest.…
MS-based untargeted metabolomics
Manages information related with metabolite identification. WebMetabase offers…
Permits metabolite identification from both unlabeled and stable-isotope…
Offers an assortment of features for metabolomics data processing. SECIMTools…
Protein interaction analysis
Realizes link prediction for general directed or undirected complex networks,…
Estimates the model parameters from experimental data, as well as to quantify…
Creates gene networks for a target sample in both dense and sparse region.…