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Emma van Bodegraven - PhD student
Open to new opportunities
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Open to new opportunities

Emma van Bodegraven

PhD student
University Medical Center Utrecht • Utrecht • Netherlands

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Gene expression array analysis
  • Laser scanning microscopy
Languages
  • English
Programming languages
  • R

Fields of interest

RNA-seq analysis
Deduces the molecular interactions and pathways associated with a fusion.…
Serves for the identification of differential expression genes by providing an…
Identifies optimal number of clusters while partitioning data. Shrinkage…
Gene expression array analysis
Allows clustering of large-scale networks. HipMCL is a distributed-memory…
Models data to maintain realistic patterns of variation and correlation. FANGS…
Reproduces Gaussian clusters. Clusterlab is a customizable package, able to…
Laser scanning microscopy
Combines several steps for a high-quality probe and primer design for a variety…
Provides a toolbox for neuropil decontamination in calcium imaging datasets.…
Defines dendritic spine geometry to gather dendritic spines using model-based…