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Erik Bongcam-Rudloff - Professor in Bioinformatics at the Swedish University of Agricultural Sciences
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Erik Bongcam-Rudloff

Professor in Bioinformatics at the Swedish University of Agricultural Sciences
Swedish University of Agricultural Sciences • Uppsala • Sweden

Skills and expertise

Fields of interest
  • WGS analysis
  • Metagenomic sequencing analysis
  • aCGH data analysis
Languages
  • English
Programming languages
  • Other

TOOLS MAINTAINED

eBioKit

Dataset

eBioKit

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Offers a wide range of services and repositories widely used in genomic research as well as documentation and material for training. eBiokit is a portable bioinformatics educational platform reducing…

Fields of interest

WGS analysis
Provides an integrated web-oriented interface for bioinformatic tools. WAVES is…
Allows to rank, filter and explore cancer genomics data (genes, cell lines and…
Handles repeated sequences for phylogenic inference. GCTree allows users to…
Metagenomic sequencing analysis
Identifies reads originating from marker, and assembles nearly full length 16S…
Estimates patient-specific models by learning patterns of differentation…
Allows for reproducible, higher-resolution comparisons across studies.…
aCGH data analysis
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…
Analyzes next-generation sequencing (NGS) from experiments using unique…