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Erika Foster - PhD Candidate in Soil Ecology
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Erika Foster

PhD Candidate in Soil Ecology
Colorado State University System • Colorado State University • Fort Collins • United States of America

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • R
  • Shell (Bash)

Fields of interest

De novo sequencing analysis
Serves as a fully automatic analysis of protein family conservation within a…
Enables large-scale metagenome and transcriptome reads clustering. SpaRC is an…
Allows long read alignment to large reference genomes by splitting the index…
Metagenomic sequencing analysis
Explains the activity of metabolic modules. Metabolizer takes into account the…
Facilitates phylogenomic analyses on microeukaryotes. GPSit is an automated…
Performs DNA sequence classification tasks. Kameris implements a technique…
Protein interaction analysis
Realizes link prediction for general directed or undirected complex networks,…
Deconstructs drugs effects of interest into basic components. OLSA is a package…
Discovers different patterns of protein-protein interactions (PPIs) in…