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Fansen Ji - Research
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Fansen Ji

Research
Tsinghua University • Beijing • China

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • RNA-seq analysis
Languages
  • Chinese
  • English
Programming languages
  • MATLAB
  • Perl
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Makes base calls in low coverage regions. PBHoover is a consensus and…
Allows users to identify tumor clones and tumor samples based on factorial…
Identifies trait-relevant tissues. SMART is a method, based on an extension of…
De novo sequencing analysis
Allows long read alignment to large reference genomes by splitting the index…
Generates clustering trees and provides a visualization feature for…
Facilitates phylogenomic analyses on microeukaryotes. GPSit is an automated…
RNA-seq analysis
Calculates average amino-acid identity (AAI) between a query proteome and all…
Finds genes with significant changes of expression across any number of…
Supplies a set of features dedicated to quality check (QC) of next generation…