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Fatemeh Habibolahi - NGS data analysis
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Fatemeh Habibolahi

NGS data analysis
École Normale Supérieure • Institut de Biologie de l'École Normale Supérieure • Paris • France

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • scRNA-seq analysis
Languages
  • English
Programming languages
  • Python
  • R

Fields of interest

RNA-seq analysis
Promotes sparse variable selection via regularization governed by the…
Consists of a dimension reduction technique designed for complex data sets with…
Facilitates phylogenomic analyses on microeukaryotes. GPSit is an automated…
ChIP-seq analysis
Permits user to work on segmentation of genomic and epigenomic profiles. iSeg…
Allows users to infer protein-protein interaction based on a hierarchical…
Builds genome-minimized strains. MinGenome excludes metabolic and regulatory…
scRNA-seq analysis
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
Enables single-cell RNA sequencing (scRNA-seq) data imputation. PBLR is a cell…
Discovers key biological properties that dominate the variability between cells…