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Gennady Fedonin - Algorithms in bioinformatics, machine learning
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Open to new opportunities

Gennady Fedonin

Algorithms in bioinformatics, machine learning
Central Research Institute of Epidemiology • Moscow • Russia

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • ChIP-seq analysis
Languages
  • English
  • Russian
Programming languages
  • Java
  • Python

Favorites and Collections

Favorites

VirGenA
Desktop

Collections

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Bioinformatics projects

TOOLS MAINTAINED

VirGenA

Desktop

VirGenA

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Provides a reference-guided assembler of highly variable viral genomes. VirGenA is based on iterative mapping and de novo reassembling of highly variable regions. It is able to assemble consensus…

Fields of interest

WGS analysis
Analyzes structural variants (SVs) and allele-specific copy numbers of genomic…
Suits for automated pipeline optimization. ToTem enables the integration of a…
Allows estimation of discordant sequences between monozygotic (MZ) twins.…
De novo sequencing analysis
Allows users to process ChIP-seq data sets from raw reads to accurate…
Suits for automated pipeline optimization. ToTem enables the integration of a…
Detects structural variants (SVs) and insertion and deletion genome-wide…
ChIP-seq analysis
Allows users to process ChIP-seq data sets from raw reads to accurate…
Enhances sequencing depth in low coverage areas with CIGAR string correction.…
Provides a web platform to execute analysis of somatic DNA mutations with…