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Feng Zhang - RNA editing
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Feng Zhang

RNA editing
Fudan University • Shanghai • China

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • scRNA-seq analysis
  • Protein interaction analysis
Languages
  • Chinese
  • English
Programming languages
  • Python

TOOLS MAINTAINED

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SPRINT

Desktop

SPRINT / SNP-free RNA editing IdeNtification Toolkit

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Identifies RNA editing sites (RESs) by clustering single nucleotide variant (SNV) duplets, bypassing the need of single nucleotide polymorphism (SNP) annotations. SPRINT is applicable to any RNA-seq…

Fields of interest

RNA-seq analysis
Permits users to perform co-expression analysis. CNNC is an application that…
Filters spurious variants caused by mouse reads in patient-derived xenografts…
Enables visualization, exploration of genes and cancers, and pinpointing of…
scRNA-seq analysis
Provides a visualization engine module. genomeview was developed for both…
Combines structural variation (SV) calls from different algorithms to reduce…
Benchmarks clustering approaches in single-cell RNA sequencing (scRNAseq) data…
Protein interaction analysis
Serves for network motif discovery. FSM is a scalable algorithm that consists…
Allows users to forecast interacting proteins. IAS is an application proposing…
Fragments pathways into functional modules and uses these to predict…