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Gary Wu - Microbiology
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Gary Wu

Microbiology
Shanghai Jiao Tong University • Shanghai • China

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
Languages
  • Chinese
Programming languages
  • Perl

Fields of interest

WGS analysis
Provides a simulation tool of single nucleotide polymorphism (SNP) clusters for…
Allows users to simulate copy number variants (CNVs) for whole exome sequencing…
Estimates gene expression levels ab initio from sequences. ExPecto is based on…
De novo sequencing analysis
Provides a multi-assembler and multi-kmer protocol. Oyster River Protocol…
Maps reads against multiple reference genomes. PanVC is designed for variant…
Rebuilds sequence(s) associated with individual haplotypes. Hmmfreq is an…
Metagenomic sequencing analysis
Enables evaluation, filtering, and analysis of gene models, as well as…
Profiles resistome by using a variation graph representation of antibiotic…
Enables the detection of regulated modules in metabolomics networks at…