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Giovanni Madrigal

Me
Texas A&M University System • Texas A&M University at Galveston • Galveston • United States of America

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • aCGH data analysis
  • Gene expression array analysis
Languages
  • English

Fields of interest

De novo sequencing analysis
Provides a multi-assembler and multi-kmer protocol. Oyster River Protocol…
Maps a read against a reference region if and only if its estimated alignment…
Simulates various mating processes. MatSim allows users to mimic both discrete…
aCGH data analysis
Analyzes next-generation sequencing (NGS) from experiments using unique…
Consists of a Bayesian, unsupervised, integrative clustering model for…
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…
Gene expression array analysis
Models data to maintain realistic patterns of variation and correlation. FANGS…
Allows to rank, filter and explore cancer genomics data (genes, cell lines and…
Allows to detect gene families in transcriptomes under strong selection. FUSTr…