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Mariano Golubicki - Whole exome sequencing from germ-line and somatic GI cancers
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Mariano Golubicki

Whole exome sequencing from germ-line and somatic GI cancers
Hospital Udaondo • Buenos Aires • Argentina

Skills and expertise

Fields of interest
  • Genome edition
  • WES analysis
  • RNA-seq analysis
Languages
  • English
  • Italian
  • Spanish
Programming languages
  • R

Fields of interest

Genome edition
Arranges single-nucleotide and amino acid variants genome-wide and measures…
Performs analysis, visualization and comparison of sequencing data from genome…
Constructs optimal gRNAs for the CRISPR-Cpf1 system. CRISPR-DT can take into…
WES analysis
Provides a set of tools to calculate the full posterior distribution of human…
Enhances sequencing depth in low coverage areas with CIGAR string correction.…
Performs somatic variant calling. DeepSomatic consists of a convolutional…
RNA-seq analysis
Corrects long read hybrid errors. HG-CoLoR combines both (i) the idea to…
Evaluates a phylogeny using a root-to-tip approach to define sub-lineages…
Constructs publication-quality visualizations from Cuffdiff, edgeR, and DESeq2.…