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Agnieszka Gromadka - NGS data analysis
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Agnieszka Gromadka

NGS data analysis
Polish Academy of Sciences • Warsaw • Poland

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • Python
  • R

Fields of interest

RNA-seq analysis
Classifies protein sequence and identifies remote protein homology via…
Normalizes measurement of long gene expression (LGE) within RNA-seq and…
Provides a visualization engine module. genomeview was developed for both…
Metagenomic sequencing analysis
Allows pathway-based analysis and visualization. PyPathway includes four…
Conducts RNA-seq read alignment and read counting from raw sequence reads to…
Maps taxonomic short-read data. taxMaps is designed to deal with large DNA/RNA…
Gene expression array analysis
Measures genomic features such as gene expression levels over time. DPGP is a…
Enables users to analyze pathways based on the variability of the expression of…
Stores projects and creates a directory of analysed results and parameter.…