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Steffi Grote - Scientific programmer
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Steffi Grote

Scientific programmer
Max Planck Society • Max Planck Institute for Evolutionary Anthropology • Leipzig • Germany

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression microarray analysis
Languages
  • English
  • German
Programming languages
  • C++
  • Python
  • R
  • Shell (Bash)

TOOLS MAINTAINED

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GOfuncR

Desktop

GOfuncR / Gene Ontology Enrichment Using FUNC

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Serves as gene ontology (GO) enrichment analysis software. GOfuncR is based on the ontology enrichment tool FUNC and uses hypergeometric test to process standard candidate vs. background enrichment…
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ABAEnrichment

Desktop

ABAEnrichment

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An R package that tests for expression enrichment in specific brain regions at different developmental stages using expression information gathered from multiple regions of the adult and developing…

Fields of interest

WGS analysis
Assists in small-variant detection. Pisces is designed to be used on germline…
Allows the joint analysis of individual-level data and summary statistics. LEP…
Allows annotation and prediction of cis-expression quantitative trait locus…
RNA-seq analysis
Identifies protein-lncRNA interactions. PLIPCOM is constructed from three…
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
Identifies genetic variants that overlap with genes coding for lincRNA or miRNA…
Gene expression microarray analysis
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Provides a pattern recognition for cell-free DNA (cfDNA). CfdnaPattern is an…
Permits users to accelerate the construction of coexpression networks on modern…