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Steffi Grote - Scientific programmer
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Steffi Grote

Scientific programmer
Max Planck Society • Max Planck Institute for Evolutionary Anthropology • Leipzig • Germany

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • English
  • German
Programming languages
  • C++
  • Python
  • R
  • Shell (Bash)

TOOLS MAINTAINED

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GOfuncR

Desktop

GOfuncR / Gene Ontology Enrichment Using FUNC

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Serves as gene ontology (GO) enrichment analysis software. GOfuncR is based on the ontology enrichment tool FUNC and uses hypergeometric test to process standard candidate vs. background enrichment…
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ABAEnrichment

Desktop

ABAEnrichment

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An R package that tests for expression enrichment in specific brain regions at different developmental stages using expression information gathered from multiple regions of the adult and developing…

Fields of interest

WGS analysis
Prioritizes disease genes for all phenotypes. IDPL aims to relieve the bias…
Determines the binary matrix of haplotypes and the proportions in the samples.…
Performs common tasks in metagenomic data analysis from raw read quality…
RNA-seq analysis
Allows users to determine logistic regression bio-signatures. PReMS is a…
Aims to characterize non-model organisms. IDP-denovo allows users to handle…
Allows detection of a subset of transcriptomic or methylomic residues. TriVote…
Gene expression array analysis
Searches specific gene expression pattern from time-series gene expression data…
Consists of a dimension reduction technique designed for complex data sets with…
Discovers low-rank biclusters within a large data-matrix. This method can be…