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Gyan Prakash Mishra - Computational Biologist
Open to new opportunities
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Open to new opportunities

Gyan Prakash Mishra

Computational Biologist
Ministry of Science and Technology • Institute of Life Sciences • Bhubaneshwar • India

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • English
Programming languages
  • C
  • Perl
  • R
  • Shell (Bash)

Favorites and Collections

Favorites

HOMER
Desktop
Bowtie
Desktop
BWA
Desktop
limma
Desktop
IGV
Desktop
BLASTN
Web
Picard
Desktop
STAR
Desktop
Cufflinks
Desktop
DESeq
Desktop
edgeR
Desktop
Tuxedo
Desktop
SeqMonk
Desktop
DAVID
Web
AltAnalyze
Desktop
GSEA
Desktop
GeneMANIA
Web
Desktop
Cytoscape
Desktop
Enrichr
Web
Mobile
kallisto
Desktop
SARTools
Desktop
systemPipeR
Desktop
WikiPathways
Web
Epiviz
Web
Desktop
sleuth
Desktop
Pvclust
Desktop
Hclust
Desktop
DESeq2
Desktop
HISAT2
Desktop
Bowtie2
Desktop

Collections

No collections...

Reviews and Discussions

LATEST REVIEWS

GSEA 2018-09-19, 17:33:41
Perform functional enrichment analysis on list of genes (Differentially expressed genes from cufflink or DESeq2). provides an option to choose database from MSigDB to search against.
IGV 2018-09-19, 17:17:12
IGV is the first choice for quick visualisation of NGS data. It takes BAM file (along with .bai file), .bedGraph file, .bigWig.

LATEST DISCUSSIONS

No discussions...


Bioinformatics projects

Fields of interest

WGS analysis
Processes raw reads to count tables for RNA-seq data using Unique Molecular…
Provides a library written in Nim programming language that suits for simple…
Serves for managing bioinformatics experiments. BioWorkbench intends to provide…
RNA-seq analysis
Utilizes a site-specific binomial model to call variants. Arnav builds a…
Allows inference of hub graphical models from high-dimensional data. DWLasso…
Consists of a script that constructs a database using the ClinVar XML files.…
ChIP-seq analysis
Serves to ChIP-seq Wig data. Wig is a standard file format, which in this…
Provides several scripts to predict active enhancers and promoters in a cell…
Generates and analyzes executable models from single-cell gene expression data.…