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Hajar Amini - RNA seq analysis
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Hajar Amini

RNA seq analysis
University of California System • University of California, Davis • Davis • United States of America

Skills and expertise

Fields of interest
  • Genome edition
  • RNA-seq analysis
  • scRNA-seq analysis
Languages
  • English
Programming languages
  • R

Fields of interest

Genome edition
Processes batch analysis of CRISPR edits using Sanger data. ICE can quantify…
Creates single-guide RNA (sgRNA) for clustered regularly interspaced short…
Arranges single-nucleotide and amino acid variants genome-wide and measures…
RNA-seq analysis
Implements several different transition kernels for updating a phylogenetic…
Combines structural variation (SV) calls from different algorithms to reduce…
Assists users in investigating cancer metabolism when data on metabolic…
scRNA-seq analysis
Recognizes the set of necessary and sufficient marker genes from an sc/snRNAseq…
Provides a method for identifying the branching times of individual genes. BGP…
Performs initial pre-processing and analysis of the droplet-based scRNA-seq…