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Helene Lopez - Bioinformatician
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Helene Lopez

French Institute of Health and Medical Research • Cancer Center of Lyon • Lyon • France

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
  • English
  • French
  • Spanish
Programming languages
  • C++
  • Python
  • R

Fields of interest

De novo sequencing analysis
Assists users to observe the potential function of new genes according to those…
Assists users in counting small k-mer frequencies in nucleotide sequences.…
Allows users to optimize a scoring function for pairwise-profile alignment…
RNA-seq analysis
Performs alignments to fusion and non-fusion gene constructs simultaneously.…
Calculates the normalizing factors for zeroinflated sequencing data such as…
Performs detection of RNA-seq differential expression (DE). RoMA is a DE…
Gene expression array analysis
Discovers trend-preserved biclusters of any shape in any types of datasets.…
Performs analyzes of high-throughput data from complex, heterogeneous tissues.…
Consists of an algorithm that integrates biological information to search…