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Hongbo Liu - Development of bioinformatics tools for epigenetics study
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Hongbo Liu

Development of bioinformatics tools for epigenetics study
Search Institute • Minneapolis • United States of America

Skills and expertise

Fields of interest
  • ChIP-seq analysis
  • BS-seq analysis
  • DNA methylation array analysis
Languages
  • Chinese
  • English
Programming languages
  • C
  • Java
  • MATLAB
  • Perl
  • Python
  • R
  • Shell (Bash)

Reviews and Discussions

LATEST REVIEWS

SMART 2017-08-08, 17:03:57
SMART2 is a newly developed tool for deep analysis of DNA methylation data detected by bisulfite sequencing platforms. This tool is focused on three main functions including de novo identification of…

LATEST DISCUSSIONS

Open
QDMR 2017-08-08, 17:50:57
0 comments
http://fame.edbc.org/qdmr/
Open
SMART 2017-08-08, 17:05:00
0 comments
http://fame.edbc.org/smart/

TOOLS MAINTAINED

SMART

Desktop

SMART / Specific Methylation Analysis and Report Tool

(1) 1 discussion(s)
Detects the cell type-specific methylation marks by integrating multiple methylomes from human cell lines and tissues. SMART is an entropy-based framework focused on integrating of a large number of…

QDMR

Desktop

QDMR / Quantitative Differentially Methylated Region

(0) 1 discussion(s)
Allows users to quantify methylation difference and identify differentially methylated regions (DMRs) across multiple samples. QDMR is a quantitative approach genome-wide quantitative comparisons of…