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I.J. Nijman - Head of medical Bioinformatics
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I.J. Nijman

Head of medical Bioinformatics
University Medical Center Utrecht • Utrecht • Netherlands

Skills and expertise

Fields of interest
  • WGS analysis
  • WES analysis
  • aCGH data analysis
  • English
Programming languages
  • Perl

Reviews and Discussions


CNVannotator 2017-10-20, 08:25:37
Seems to have a new URL: https://bioinfo.uth.edu/CNVannotator/ However, as reported before, I also do not get reports reliably. The tool has great promises; addition of an API would be…


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Fields of interest

WGS analysis
Includes implementations of the autopolyploid (diseq), allopolyploid (alloSNP),…
Provides a platform for the diagnostic of rare genetic diseases. GenIO uses…
Supplies a protein homology search method alternative to BLAST. TOPAZ is a…
WES analysis
Serves for cancer-related gene prioritization. MGOGP is an algorithm that can…
Constructs short sequence read sets for thousands of spike-in variants that…
Serves for mutation-based clustering of tumors. ccpwModel's binary variables…
aCGH data analysis
Consists of a Bayesian, unsupervised, integrative clustering model for…
Analyzes next-generation sequencing (NGS) from experiments using unique…
Permits user to work on segmentation of genomic and epigenomic profiles. iSeg…