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Isabel Castanho - PhD student
Open to new opportunities
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Open to new opportunities

Isabel Castanho

PhD student
University of Exeter • Exeter • United Kingdom

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • BS-seq analysis
  • DNA methylation array analysis
Languages
  • English
Programming languages
  • R

Fields of interest

RNA-seq analysis
Quantifies miRNA from small RNA-seq. miR-MaGiC minimizes noise associated with…
Allows demultiplexing 5’-indexed reads. Axe matches the prefix of a sequence…
Provides a tool to select the band width according to the read’s error rates.…
BS-seq analysis
Serves as a dynamic alignment-free and reference-free read compression tool.…
Serves as a fully automatic analysis of protein family conservation within a…
Serves to ChIP-seq Wig data. Wig is a standard file format, which in this…
DNA methylation array analysis
Proceeds quality control, normalizes and performs epigenome-wide association…
Enables evaluation, filtering, and analysis of gene models, as well as…
Provides an online platform for collecting, managing, analyzing, visualizing…