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Issa diop - Assemble and annotation of genomes
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Issa diop

Assemble and annotation of genomes
University of Zurich • Zürich • Switzerland

Skills and expertise

Fields of interest
  • Genome edition
  • WGS analysis
  • De novo sequencing analysis
Languages
  • English
  • French
Programming languages
  • Python

Fields of interest

Genome edition
Creates single-guide RNA (sgRNA) for clustered regularly interspaced short…
Processes batch analysis of CRISPR edits using Sanger data. ICE can quantify…
Constructs optimal gRNAs for the CRISPR-Cpf1 system. CRISPR-DT can take into…
WGS analysis
Allows analysis of sequence variants. OVAS is designed for annotating and…
Identifies origin of transfer sites (oriTs) in bacterial mobile genetic…
Simulates genotypes for case-parent triads, case-control, and quantitative…
De novo sequencing analysis
Calculates the mutation distance between two strings of the length…
Enables genotyping and variant annotation of resequencing data produced by…
Consists of a method for comparing trees whose labels belong to a pre-defined…