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Jamie Allen - Bioinformatician
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Jamie Allen

University of Cambridge • Cambridge • United Kingdom

Skills and expertise

Fields of interest
  • WGS analysis
  • WES analysis
  • aCGH data analysis
  • English
Programming languages
  • Java
  • Perl
  • Python

Fields of interest

WGS analysis
Authorizes users to perform low-frequency variant calling. AIRVF is a…
Measures the evidence of aggregate-level pleiotropic association and estimates…
Provides a read alignment software for whole genome sequencing (WGS). CS-BWAMEM…
WES analysis
Allows long read alignment to large reference genomes by splitting the index…
Offers a pipeline tool for post-processing structural variant calls. MAVIS…
Provides an approach for integrating transcript assemblies. Mikado is a…
aCGH data analysis
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…
Consists of a Bayesian, unsupervised, integrative clustering model for…