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Jan Pačes - Bioinformatics
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Jan Pačes

Bioinformatics
Academy of Sciences of the Czech Republic • Institute of Molecular Genetics • Prague • Czech Republic

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • RNA-seq analysis
Languages
  • English
Programming languages
  • Perl
  • R
  • Shell (Bash)
  • Other

Favorites and Collections

Favorites

MUMmer
Desktop

Collections

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Fields of interest

WGS analysis
Clusters tumors based on the somatic mutation spectra of the putative cancer…
Investigates mutation count data to assess the signatures of mutational…
Estimates telomere length from cancer whole genome sequencing (WGS) data.…
De novo sequencing analysis
Predicts cell-type specificity of a transcription factors (TFs) binding site…
Identifies conserved non-coding elements (CNEs) between two given DNA sequences…
Allows users to realize accurate predictions. RIFRAF is an algorithm that can…
RNA-seq analysis
Classifies the position preferences of cis-regulatory elements (CRE) via a…
Serves for the identification of differential expression genes by providing an…
Allows users to determine logistic regression bio-signatures. PReMS is a…