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Johanna Nelkner - Metagenomic analysis of different microbial communities
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Open to new opportunities

Johanna Nelkner

Metagenomic analysis of different microbial communities
Bielefeld University • Bielefeld • Germany

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • English
  • German
Programming languages
  • Python

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Reviews and Discussions


Shinyheatmap 2017-12-07, 18:19:30
PNG download does not work, plus I would like to be able to display the actual values in the heatmap. More colors would also be beneficial. Despite of that it is a nice and easy to handle…
EDGAR 2017-12-01, 07:59:02
Combines all current comparative analyses as ANI/AAI calculation, Core/Pangenome calculation, singleton analysis. Also provides a Comparative Genome Viewer and can calculate phylogenetic trees based…


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Fields of interest

WGS analysis
Aims to address the cluster containment problem for phylogenetic networks.…
Produces continuous long reads via a Pacific Biosciences sequencing simulator.…
Allows users to compare the performance of different tools for the non-coding…
RNA-seq analysis
Allows users to perform reconstruction of phylogenetic trees and ancestral…
Fragments pathways into functional modules and uses these to predict…
Assists users in reading TIGER-rate file or other rate files. RatePartitions…
Metagenomic sequencing analysis
Defines the distribution of accessory genomic elements (AGEs) within a…
Classifies protein sequence and identifies remote protein homology via…
Integrates multi-omics profiles for phenotype prediction. iOmicsPASS utilizes…