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Johannes Cairns - PhD student
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Johannes Cairns

PhD student
University of Helsinki • Helsinki • Finland

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • English
Programming languages
  • Python
  • R

Fields of interest

WGS analysis
Identifies and validates deletion structural variation (SV) in trios with whole…
Allows users to perform genomic analyses. iPat performs both genome-wide…
Allows users to estimate the power of their sequencing experiments for copy…
De novo sequencing analysis
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…
Allows users to extract a statistically significant subset of a determined set…
Enhances sequencing depth in low coverage areas with CIGAR string correction.…
Metagenomic sequencing analysis
Enables to build custom genome browsers. GIVe is a programming library allowing…
Enables decomposition of a gene tree into trees consistent with a species tree.…
Examines epigenomic and transcriptomic next generation sequencing (NGS) data.…