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Johannes Soeding - Quantitative and Computational Biology gropu
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Johannes Soeding

Quantitative and Computational Biology gropu
Max Planck Society • Max Planck Institute for Biophysical Chemistry • Göttingen • Germany

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • C++

Fields of interest

WGS analysis
Provides a correction tool for the association analysis on the biased data.…
Detects structural variants (SVs) and insertion and deletion genome-wide…
Permits to evaluate pleiotropy in a standard mendelian randomization (MR)…
De novo sequencing analysis
Serves to ChIP-seq Wig data. Wig is a standard file format, which in this…
Estimates species trees given a set of rooted gene trees. DynaDup is based on…
Investigates mutation count data to assess the signatures of mutational…
Metagenomic sequencing analysis
Offers a model investigating longitudinal and progressive dynamics of metabolic…
Allows pathway-based analysis and visualization. PyPathway includes four…
Evaluates RNA-seq alignment results. RNAseqEval is a package that can be used…