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Jonathan Collins - Research Scientist
Open to new opportunities
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Open to new opportunities

Jonathan Collins

Research Scientist
Tallaght Hospital • Dublin • Ireland

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • English
Programming languages
  • Python

Fields of interest

WGS analysis
Enables bacterial genome-wide association (BGWA) to predict bacterial genes…
Allows users to handle and solve the single individual haplotyping (SIH)…
Identifies origin of transfer sites (oriTs) in bacterial mobile genetic…
De novo sequencing analysis
Rebuilds sequence(s) associated with individual haplotypes. Hmmfreq is an…
Identifies conserved non-coding elements (CNEs) between two given DNA sequences…
Consists of a genomic context explorer. GeneSpy is a program that aims to…
Metagenomic sequencing analysis
Allows users to build a pan-genome data structure. seq-seq-pan is a software…
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Examines epigenomic and transcriptomic next generation sequencing (NGS) data.…