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Jonathan Mercier - PhD Computational Biology
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Jonathan Mercier

PhD Computational Biology
Centre National de Recherche en Génomique Humaine • France

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
  • French
Programming languages
  • C
  • C++
  • Java
  • Javascript
  • Python
  • Other

TOOLS MAINTAINED

GROOLS

Desktop

GROOLS / Genomic Rule Object-Oriented Logic System

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Assists biocurators in functional annotation of proteins. GROOLS is an expert system using paraconsistent logic that evaluates the completeness and the consistency of predicted functions through…

Fields of interest

De novo sequencing analysis
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
Discovers the mean in a partition distribution. mean_partition is based on an…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
RNA-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Assists users for annotating transcriptome and functional analysis of…
Enables exploration and classification of large collections of gene clusters.…
Metagenomic sequencing analysis
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Clarifies detailed evolutionary relationships between gene clusters. CORASON…