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Jordan - PhD Student
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PhD Student
University of Edinburgh • Edinburgh • United Kingdom

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • English
Programming languages
  • Python
  • R

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Fields of interest

WGS analysis
Measures epistatic interactions on a genome-wide level based on genomic data.…
Identifies origin of transfer sites (oriTs) in bacterial mobile genetic…
Consists of a script that constructs a database using the ClinVar XML files.…
De novo sequencing analysis
Performs tree reconstruction based on the supermatrix paradigm. OneTwoTree is a…
Enables decomposition of a gene tree into trees consistent with a species tree.…
Minimizes the gap open and gap extension penalties depending on the length of…
Metagenomic sequencing analysis
Predicts de novo profile generation based on sequence context. SPBuild…
Generates clustering trees and provides a visualization feature for…
Enables users to compare the global and local biological signal of networks.…